ant:
<ant>
  <mkdir dir="/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution" />
  <mkdir dir="/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing" />
</ant>
mcc -o PCAGen8 -W WinMain:PCAGen8 -T link:exe -d /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing -v /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/Asymmetry/aboxsw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/aheadw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/aheadw2.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/Asymmetry/AsymBoxTwo8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/Asymmetry/AsymBoxTwo8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBoxsw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/basereg.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/BootMeanatXT2.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/BootMeanatXT3.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centerref.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centpos.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centsize.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/checkpcaRoot.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/CopyBigImagePrintNA.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/MatrixCorr/CorrExplore8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/MatrixCorr/CorrExplore8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/DBSaveBox.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/DBSwitch.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/D_match/dentsuper.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/DisparityBox8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/DisparityBox8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/dload.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/dload3.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/eigsort.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/formrotate.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/tm/formtrad2.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/fullpdist.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/D_match/get_dental_distance.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getconsensus.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getconsensuspca.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getconsensuspcafull.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getfullpsup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpsup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpw_arbit.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpwpca.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpwpcaenergy.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/gettpse.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/gettspl.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/growveceq.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/grpmean1.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/D_match/iterate_dental_reference.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/jackknife_groupings_pca_means.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/MatrixCorr/matcor.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/meth3sup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/mfload.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/mfloadlab.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/msgboxd.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/NMMDSGenMac/NMMDSGen8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/NMMDSGenMac/NMMDSGen8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/NMMDSGenMac/nmsw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/nndist.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/onegrouprarify.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/pairwisefull.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/pca_means.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/pcaalign.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGenSP8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGenSP8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGensw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGenswSP.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/pdist_HDS.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/pdisthds.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/plot2svg_20101128/plot2svg.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/RefAngleSetup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/refstandardize.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/reversepw6u.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/reversepwarb.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/rftra.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/rotationhandler.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/scdisparity.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/scpcoeff_arbrot.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/scpcoeffpca.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/setlinethickness.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/setsymbolfill.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/showform5.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/showpw5.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshape.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshape_rot.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshapec.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/sortsize.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/standardsize.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/standardsize2.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/MatrixCorr/tmcorrsw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/UniArbitrary.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/uniparmproc.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/uspline.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/vertxy.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/wsspline.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/xyfromvert.m 
Compiler version: 5.0 (R2013b)
Dependency analysis by DEPFUN.
Processing /Applications/MATLAB_R2013b.app/toolbox/matlab/maci64/mcc.enc
Processing /Applications/MATLAB_R2013b.app/toolbox/stats/maci64/mcc.enc
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/Asymmetry/AsymBoxTwo8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/MatrixCorr/CorrExplore8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/DistanceBox/DisparityBox8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/NMMDSGenMac/NMMDSGen8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGenSP8.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen6m.fig
Processing /Applications/MATLAB_R2013b.app/toolbox/shared/statslib/maci64/mcc.enc
Processing /Applications/MATLAB_R2013b.app/toolbox/matlab/guide/guideopts.fig
Processing /Applications/MATLAB_R2013b.app/toolbox/shared/spcuilib/maci64/mcc.enc
Processing include files...
2 item(s) added.
Processing directories installed with MCR...
The file /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing/mccExcludedFiles.log contains a list of functions excluded from the CTF archive.
0 item(s) added.
Generating MATLAB path for the compiled application...
Created 66 path items.
[Warning: Adding path
"/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen" to Compiler
path instance.] 
Parsing file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8.m"
	(Referenced from: "Compiler Command Line").
Parsing file "/Applications/MATLAB_R2013b.app/toolbox/compiler/deploy/deployprint.m"
	(Referenced from: "Compiler Command Line").
Parsing file "/Applications/MATLAB_R2013b.app/toolbox/compiler/deploy/printdlg.m"
	(Referenced from: "Compiler Command Line").
Deleting 11 temporary MEX authorization files.
Removing: '/tmp/03f9fxZnii1_16287.auth'.
Removing: '/tmp/03f9fU7fEXg_16287.auth'.
Removing: '/tmp/03f9fECmWTJ_16287.auth'.
Removing: '/tmp/03f9f5zFlou_16287.auth'.
Removing: '/tmp/03f9f45BSCF_16287.auth'.
Removing: '/tmp/03f9fYS32RI_16287.auth'.
Removing: '/tmp/03f9fHQitHZ_16287.auth'.
Removing: '/tmp/03f9fhyBdFi_16287.auth'.
Removing: '/tmp/03f9fUru4T1_16287.auth'.
Removing: '/tmp/03f9fprxZFz_16287.auth'.
Removing: '/tmp/03f9ft3Mkuc_16287.auth'.
Generating file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing/readme.txt".
Generating file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing/run_PCAGen8.sh".
Packaging...
Adding custom icon /Applications/MATLAB_R2013b.app/toolbox/compiler/Resources/default_icon.icns to /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing/PCAGen8.app.
Creating the bundle...
Copying $/Applications/MATLAB_R2013b.app/toolbox/compiler/maci64/setup.app tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/MyAppInstaller_web.app.
Copying $/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/bundle.zip tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/bundle.zip.
Copying $/var/folders/yb/xwm0k_155fj2zn3440r6zf5m0029_t/T/splash7205332105724032595.tmp tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/splash.png.
Copying $/Applications/MATLAB_R2013b.app/toolbox/compiler/Resources/default_icon.icns tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/installer.icns.
Web based installer created at /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_redistribution/MyAppInstaller_web.app.
Packaging complete.
Source '/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/PCAGen/PCAGen8/for_testing/PCAGen8.app' exists but is a directory
