ant:
<ant>
  <mkdir dir="/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution" />
  <mkdir dir="/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing" />
</ant>
mcc -o CVAGen8 -W WinMain:CVAGen8 -T link:exe -d /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing -v /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/aheadw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBoxsw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/basereg.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/bootcvarate.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/bootplscvarate.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centerref.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centpos.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/centsize.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8.fig -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGensw.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/dload.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/dload3.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/eigsort.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/formrotate.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getconsensus.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpsup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/getpw_arbit.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/gettpse.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/gettspl.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/growvec3.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/grpmean1.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/grpmean1_ud.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/jackknife_groupings_svd2.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/jacknife_assignments.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/meth3sup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/mfload.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/mfloadlab.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/pca_cva_sweep.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/PCAthenCVA.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/pdist_HDS.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/PLSthenCVA.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/rangeCVADist.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/RefAngleSetup.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/reversepw6u.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/reversepwarb.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/rftra.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/rotationhandler.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/scpcoeff_arbrot.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/setlinethickness.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/setsymbolfill.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/showpw5.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshape.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshape_rot.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/ontogeny/showshapec.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/ss_proc_grp_lst.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/UniArbitrary.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/uniparmproc.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/uspline.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/vertxy.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/wsspline.m -a /Users/hsheets/Documents/IMP_Code/paleo_8/MAT/statstuff/xyfromvert.m 
[Warning: Duplicate directory name:
/private/tmp/../../Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen] 
Compiler version: 5.0 (R2013b)
Dependency analysis by DEPFUN.
Processing /Applications/MATLAB_R2013b.app/toolbox/matlab/maci64/mcc.enc
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/AuxBox.fig
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8.fig
Processing /Applications/MATLAB_R2013b.app/toolbox/stats/maci64/mcc.enc
Processing /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen6o.fig
Processing /Applications/MATLAB_R2013b.app/toolbox/shared/statslib/maci64/mcc.enc
Processing /Applications/MATLAB_R2013b.app/toolbox/shared/spcuilib/maci64/mcc.enc
Processing include files...
2 item(s) added.
Processing directories installed with MCR...
The file /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing/mccExcludedFiles.log contains a list of functions excluded from the CTF archive.
0 item(s) added.
Generating MATLAB path for the compiled application...
Created 58 path items.
[Warning: Adding path
"/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen" to Compiler
path instance.] 
Parsing file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8.m"
	(Referenced from: "Compiler Command Line").
Parsing file "/Applications/MATLAB_R2013b.app/toolbox/compiler/deploy/deployprint.m"
	(Referenced from: "Compiler Command Line").
Parsing file "/Applications/MATLAB_R2013b.app/toolbox/compiler/deploy/printdlg.m"
	(Referenced from: "Compiler Command Line").
Deleting 10 temporary MEX authorization files.
Removing: '/tmp/0103aIpVIjh_4154.auth'.
Removing: '/tmp/0103ah0g07s_4154.auth'.
Removing: '/tmp/0103a7a7DLI_4154.auth'.
Removing: '/tmp/0103aEpZ6lA_4154.auth'.
Removing: '/tmp/0103acqNQCv_4154.auth'.
Removing: '/tmp/0103atNcDK4_4154.auth'.
Removing: '/tmp/0103a8VDDvd_4154.auth'.
Removing: '/tmp/0103ajZzhUp_4154.auth'.
Removing: '/tmp/0103aPv3kTH_4154.auth'.
Removing: '/tmp/0103aLecFIy_4154.auth'.
Generating file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing/readme.txt".
Generating file "/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing/run_CVAGen8.sh".
Packaging...
Adding custom icon /Applications/MATLAB_R2013b.app/toolbox/compiler/Resources/default_icon.icns to /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing/CVAGen8.app.
Creating the bundle...
Copying $/Applications/MATLAB_R2013b.app/toolbox/compiler/maci64/setup.app tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/MyAppInstaller_web.app.
Copying $/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/bundle.zip tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/bundle.zip.
Copying $/var/folders/yb/xwm0k_155fj2zn3440r6zf5m0029_t/T/splash7359549020010559292.tmp tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/splash.png.
Copying $/Applications/MATLAB_R2013b.app/toolbox/compiler/Resources/default_icon.icns tp /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/MyAppInstaller_web.app/Contents/Resources/installer.icns.
Web based installer created at /Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_redistribution/MyAppInstaller_web.app.
Packaging complete.
Source '/Users/hsheets/Documents/IMP_Code/paleo_8/zelditch/rev7/CVAGen/CVAGen8/for_testing/CVAGen8.app' exists but is a directory
